| Friday, June 5th , 1959 |
| Kinboshi Kites: Signed free agent SP Mitsuhisa Okamoto to a minor league contract. |
| Sapporo Bears: Signed free agent RP Teppei Kaneko to a minor league contract. |
| Sapporo Bears: Released RP Teppei Kaneko. |
| Denki Dynamics: Drafted SP Yoshitsune Nakamura in the 1959 first-year player draft (Round 1, Pick 1, 1st overall pick). |
| Kobe Bulls: Drafted SP Yasuhiko Hidaka in the 1959 first-year player draft (Round 1, Pick 2, 2nd overall pick). |
| Osaka Sailors: Drafted C Sukeyasu Arakawa in the 1959 first-year player draft (Round 1, Pick 3, 3rd overall pick). |
| Hosho Reliables: Drafted CF Munenao Ono in the 1959 first-year player draft (Round 1, Pick 4, 4th overall pick). |
| Vesutan Bees: Drafted RF Satoshi Hino in the 1959 first-year player draft (Round 1, Pick 5, 5th overall pick). |
| Rakisuta Rams: Drafted SP Tai Shimabukuro in the 1959 first-year player draft (Round 1, Pick 6, 6th overall pick). |
| Fukuoka Falcons: Drafted 3B Toshifumi Shibuya in the 1959 first-year player draft (Round 1, Pick 7, 7th overall pick). |
| Kinboshi Kites: Drafted SS Tsunemori Shimizu in the 1959 first-year player draft (Round 1, Pick 8, 8th overall pick). |
| Kyoto Owls: Drafted CF Yuji Akagi in the 1959 first-year player draft (Round 1, Pick 9, 9th overall pick). |
| Sapporo Bears: Drafted CF Tatsuhiko Ueda in the 1959 first-year player draft (Round 1, Pick 10, 10th overall pick). |
| Yokohama Kingfishers: Drafted CF Tanyu Watanabe in the 1959 first-year player draft (Round 1, Pick 11, 11th overall pick). |
| Nagasaki Stars: Drafted CF Tenchi Uemura in the 1959 first-year player draft (Round 1, Pick 12, 12th overall pick). |
| Denki Dynamics: Drafted CF Kimitada Taira in the 1959 first-year player draft (Round 2, Pick 1, 13th overall pick). |
| Kobe Bulls: Drafted CL Shiroku Terada in the 1959 first-year player draft (Round 2, Pick 2, 14th overall pick). |
| Osaka Sailors: Drafted SS Masu Osaki in the 1959 first-year player draft (Round 2, Pick 3, 15th overall pick). |
| Hosho Reliables: Drafted RF Kiyomori Kawai in the 1959 first-year player draft (Round 2, Pick 4, 16th overall pick). |
| Vesutan Bees: Drafted CL Tadahito Koike in the 1959 first-year player draft (Round 2, Pick 5, 17th overall pick). |
| Rakisuta Rams: Drafted 3B Bokkai Ishida in the 1959 first-year player draft (Round 2, Pick 6, 18th overall pick). |
| Fukuoka Falcons: Drafted CF Toshifumi Koyanagi in the 1959 first-year player draft (Round 2, Pick 7, 19th overall pick). |
| Kinboshi Kites: Drafted RF Kesanori Kikuchi in the 1959 first-year player draft (Round 2, Pick 8, 20th overall pick). |
| Kyoto Owls: Drafted 2B Tamotsu Endo in the 1959 first-year player draft (Round 2, Pick 9, 21st overall pick). |
| Sapporo Bears: Drafted 2B Teruo Kamiya in the 1959 first-year player draft (Round 2, Pick 10, 22nd overall pick). |
| Yokohama Kingfishers: Drafted CL Kazou Nakamoto in the 1959 first-year player draft (Round 2, Pick 11, 23rd overall pick). |
| Nagasaki Stars: Drafted SP Kuma Abe in the 1959 first-year player draft (Round 2, Pick 12, 24th overall pick). |
| Denki Dynamics: Drafted SP Roy Marks in the 1959 first-year player draft (Round 3, Pick 1, 25th overall pick). |
| Kobe Bulls: Drafted SP Shinichi Nakada in the 1959 first-year player draft (Round 3, Pick 2, 26th overall pick). |
| Osaka Sailors: Drafted CF Aki Sawada in the 1959 first-year player draft (Round 3, Pick 3, 27th overall pick). |
| Hosho Reliables: Drafted 1B Kirima Shishido in the 1959 first-year player draft (Round 3, Pick 4, 28th overall pick). |
| Vesutan Bees: Drafted SP Yugo Imoto in the 1959 first-year player draft (Round 3, Pick 5, 29th overall pick). |
| Rakisuta Rams: Drafted CF Toshiyasu Horiuchi in the 1959 first-year player draft (Round 3, Pick 6, 30th overall pick). |
| Fukuoka Falcons: Drafted RF Shigetsugu Yamaoka in the 1959 first-year player draft (Round 3, Pick 7, 31st overall pick). |
| Kinboshi Kites: Drafted CF Ryota Uehara in the 1959 first-year player draft (Round 3, Pick 8, 32nd overall pick). |
| Kyoto Owls: Drafted CL Hirokatsu Funakoshi in the 1959 first-year player draft (Round 3, Pick 9, 33rd overall pick). |
| Sapporo Bears: Drafted SS Katsunan Kon in the 1959 first-year player draft (Round 3, Pick 10, 34th overall pick). |
| Yokohama Kingfishers: Drafted 1B Unpei Takemoto in the 1959 first-year player draft (Round 3, Pick 11, 35th overall pick). |
| Nagasaki Stars: Drafted CF Kokoro Harada in the 1959 first-year player draft (Round 3, Pick 12, 36th overall pick). |
| Denki Dynamics: Drafted RP Hirokuni Kato in the 1959 first-year player draft (Round 4, Pick 1, 37th overall pick). |
| Kobe Bulls: Drafted SP Robun Wada in the 1959 first-year player draft (Round 4, Pick 2, 38th overall pick). |
| Osaka Sailors: Drafted RP Kikugoro Fujiyama in the 1959 first-year player draft (Round 4, Pick 3, 39th overall pick). |
| Hosho Reliables: Drafted RP Ushio Noguchi in the 1959 first-year player draft (Round 4, Pick 4, 40th overall pick). |
| Vesutan Bees: Drafted CF Takanobu Nomura in the 1959 first-year player draft (Round 4, Pick 5, 41st overall pick). |
| Rakisuta Rams: Drafted RP Masanori Suyama in the 1959 first-year player draft (Round 4, Pick 6, 42nd overall pick). |
| Fukuoka Falcons: Drafted RP Okitsugu Tamura in the 1959 first-year player draft (Round 4, Pick 7, 43rd overall pick). |
| Kinboshi Kites: Drafted SP Sessue Yamamoto in the 1959 first-year player draft (Round 4, Pick 8, 44th overall pick). |
| Kyoto Owls: Drafted CF Shinsei Akao in the 1959 first-year player draft (Round 4, Pick 9, 45th overall pick). |
| Sapporo Bears: Drafted SP Shinjiro Kondo in the 1959 first-year player draft (Round 4, Pick 10, 46th overall pick). |
| Yokohama Kingfishers: Drafted SP Yasuo Saito in the 1959 first-year player draft (Round 4, Pick 11, 47th overall pick). |
| Nagasaki Stars: Drafted SP Kikaku Uchida in the 1959 first-year player draft (Round 4, Pick 12, 48th overall pick). |
| Denki Dynamics: Drafted RP Koshi Sugimoto in the 1959 first-year player draft (Round 5, Pick 1, 49th overall pick). |
| Kobe Bulls: Drafted 1B Kodama Koyama in the 1959 first-year player draft (Round 5, Pick 2, 50th overall pick). |
| Osaka Sailors: Drafted RP Yoshino Ikeda in the 1959 first-year player draft (Round 5, Pick 3, 51st overall pick). |
| Hosho Reliables: Drafted SP Nobuhisa Ogata in the 1959 first-year player draft (Round 5, Pick 4, 52nd overall pick). |
| Vesutan Bees: Drafted CF Atsumori Yokota in the 1959 first-year player draft (Round 5, Pick 5, 53rd overall pick). |
| Rakisuta Rams: Drafted RP Murai Nakata in the 1959 first-year player draft (Round 5, Pick 6, 54th overall pick). |
| Fukuoka Falcons: Drafted SP Kento Okada in the 1959 first-year player draft (Round 5, Pick 7, 55th overall pick). |
| Kinboshi Kites: Drafted RF Shinta Sasaki in the 1959 first-year player draft (Round 5, Pick 8, 56th overall pick). |
| Kyoto Owls: Drafted 3B Yoshio Nishioka in the 1959 first-year player draft (Round 5, Pick 9, 57th overall pick). |
| Sapporo Bears: Drafted 3B Toshimichi Yamada in the 1959 first-year player draft (Round 5, Pick 10, 58th overall pick). |
| Yokohama Kingfishers: Drafted 3B Taysuke Nakajima in the 1959 first-year player draft (Round 5, Pick 11, 59th overall pick). |
| Nagasaki Stars: Drafted SS Tsuyohi Kimura in the 1959 first-year player draft (Round 5, Pick 12, 60th overall pick). |
